Sign in to save your progress, vote, and build your own decks.Sign in
CSB472-Final Exam-Databases/Programs
18 cards·by SGlucose
RefSeq
provides stable reference sequences of all molec involve din the central dogma. have letters
which indicate type seq (DNA, ect...)
UniGene
DB. cluster EST and mRNA seq aong with conding seq and annotated genomic DNA in subsets of
related seq
UniProt
Protien DB. integrate a bunch of different databses
PROSITE
motif DB
Pfam
motif DB
GEO
expression DB
ArrayExpress
expression DB
Entrez
a website that lets you query across different DBs
TAVERNA
a website with a human interphase that lets you design automated analysis
Bioconductor
??
Prosite
a protein DB. contains entries describing the protein families, domains and functional
sites as well as thier patterns and profiles
Pfam
DB of prot families and thier HMMS
SuperFam
DB of structurally related proteins and their HMMs
InterPro
prot DB. Integrated view of the commonly used signature databases
Glimmer
prok gene finding program
Grail
neural net gene prediction program
Corrolation Coefficient
measures a gene prediction program's accuracy (based on sensitivity and specificity)
2 programatic gene finding stratagies
rule-based and neural net